Abstract
Background: Two acute respiratory distress syndrome (ARDS) subphenotypes (hyperinflammatory and hypoinflammatory) with distinct clinical and biological features and differential treatment responses have been identified using latent class analysis (LCA) in seven individual cohorts. To facilitate bedside identification of subphenotypes, clinical classifier models using readily available clinical variables have been described in four randomised controlled trials. We aimed to assess the performance of these models in observational cohorts of ARDS. Methods: In this observational, multicohort, retrospective study, we validated two machine-learning clinical classifier models for assigning ARDS subphenotypes in two observational cohorts of patients with ARDS: Early Assessment of Renal and Lung Injury (EARLI; n=335) and Validating Acute Lung Injury Markers for Diagnosis (VALID; n=452), with LCA-derived subphenotypes as the gold standard. The primary model comprised only vital signs and laboratory variables, and the secondary model comprised all predictors in the primary model, with the addition of ventilatory variables and demographics. Model performance was assessed by calculating the area under the receiver operating characteristic curve (AUC) and calibration plots, and assigning subphenotypes using a probability cutoff value of 0·5 to determine sensitivity, specificity, and accuracy of the assignments. We also assessed the performance of the primary model in EARLI using data automatically extracted from an electronic health record (EHR; EHR-derived EARLI cohort). In Large Observational Study to Understand the Global Impact of Severe Acute Respiratory Failure (LUNG SAFE; n=2813), a multinational, observational ARDS cohort, we applied a custom classifier model (with fewer variables than the primary model) to determine the prognostic value of the subphenotypes and tested their interaction with the positive end-expiratory pressure (PEEP) strategy, with 90-day mortality as the dependent variable. Findings: The primary clinical classifier model had an area under receiver operating characteristic curve (AUC) of 0·92 (95% CI 0·90–0·95) in EARLI and 0·88 (0·84–0·91) in VALID. Performance of the primary model was similar when using exclusively EHR-derived predictors compared with manually curated predictors (AUC=0·88 [95% CI 0·81–0·94] vs 0·92 [0·88–0·97]). In LUNG SAFE, 90-day mortality was higher in patients assigned the hyperinflammatory subphenotype than in those with the hypoinflammatory phenotype (414 [57%] of 725 vs 694 [33%] of 2088; p<0·0001). There was a significant treatment interaction with PEEP strategy and ARDS subphenotype (p=0·041), with lower 90-day mortality in the high PEEP group of patients with the hyperinflammatory subphenotype (hyperinflammatory subphenotype: 169 [54%] of 313 patients in the high PEEP group vs 127 [62%] of 205 patients in the low PEEP group; hypoinflammatory subphenotype: 231 [34%] of 675 patients in the high PEEP group vs 233 [32%] of 734 patients in the low PEEP group). Interpretation: Classifier models using clinical variables alone can accurately assign ARDS subphenotypes in observational cohorts. Application of these models can provide valuable prognostic information and could inform management strategies for personalised treatment, including application of PEEP, once prospectively validated. Funding: US National Institutes of Health and European Society of Intensive Care Medicine.
| Original language | English |
|---|---|
| Pages (from-to) | 367-377 |
| Number of pages | 11 |
| Journal | The Lancet Respiratory Medicine |
| Volume | 10 |
| Issue number | 4 |
| DOIs | |
| Publication status | Published - 1 Apr 2022 |
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In: The Lancet Respiratory Medicine, Vol. 10, No. 4, 01.04.2022, p. 367-377.
Research output: Contribution to journal › Article › Academic › peer-review
TY - JOUR
T1 - Validation and utility of ARDS subphenotypes identified by machine-learning models using clinical data
T2 - an observational, multicohort, retrospective analysis
AU - Maddali, Manoj V.
AU - Churpek, Matthew
AU - LUNG SAFE Investigators and the ESICM Trials Group
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AU - Rodriguez, Lucia L.
AU - Sánchez-Ballesteros, Jesús
AU - González-Salamanca, Ángela
AU - Jimenez, Antonio G.
AU - Huerta, Francisco P.
AU - Diaz, Juan Carlos J. Sotillo
AU - Lopez, Esther Bermejo
AU - Moya, David D. Llinares
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AU - Kedelv, Hans
AU - Tibblin, Anna Oscarsson
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AU - Hedlund, Lars
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AU - Eriksson, Karin E.
AU - Glietsch, Rita
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AU - Nygren, Ingela
AU - Nunes, Silvia L.
AU - Morin, Anna-Karin
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AU - Zender, Hervé O.
AU - Leemann-Refondini, Corinne
AU - Elatrous, Souheil
AU - Bouchoucha, Slaheddine
AU - Chouchene, Imed
AU - Ouanes, Islem
AU - Ben Souissi, Asma
AU - Kamoun, Salma
AU - Demirkiran, Oktay
AU - Aker, Mustafa
AU - Erbabacan, Emre
AU - Ceylan, Ilkay
AU - Girgin, Nermin Kelebek
AU - Ozcelik, Menekse
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AU - Meco, Basak Ceyda
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AU - Kennedy, Barry
AU - Parhar, Ken
AU - Srinivasa, Latha
AU - McAuley, Danny
AU - Steinberg, Jack
AU - Hopkins, Phil
AU - Mellis, Clare
AU - Stansil, Frank
AU - Kakar, Vivek
AU - Hadfield, Dan
AU - Brown, Christine
AU - Vercueil, Andre
AU - Bhowmick, Kaushik
AU - Humphreys, Sally K.
AU - Ferguson, Andrew
AU - Mckee, Raymond
AU - Raj, Ashok S.
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AU - Twohey, Linda
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AU - Morton, Alex
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AU - Hormis, Anil P.
AU - Kannan, Santhana G.
AU - Namih, Miriam
AU - Reschreiter, Henrik
AU - Camsooksai, Julie
AU - Kumar, Alek
AU - Rugonfalvi, Szabolcs
AU - Nutt, Christopher
AU - Oneill, Orla
AU - Seasman, Colette
AU - Dempsey, Ged
AU - Scott, Christopher J.
AU - Ellis, Helen E.
AU - Mckechnie, Stuart
AU - Hutton, Paula J.
AU - di Tomasso, Nora N.
AU - Vitale, Michela N.
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AU - Cranshaw, Julius H.
AU - Willett, Emma L.
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AU - Dawson, Heidi
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AU - Boyd, Owen
AU - de Gordoa, Laura Ortiz-Ruiz
AU - Bramall, Jon
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AU - Mccalman, Katie H.
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AU - Kajtor, Istvan
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AU - Pittini, Gustavo
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AU - Serra, Carolina
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AU - Mukkera, Satyanarayana Reddy
AU - Kulkarni, Shreedhar
AU - Lee, Jarone
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AU - Gomaa, Dina
AU - Tainter, Christopher
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AU - Stigler, William
AU - Batra, Hitesh
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AU - Judy, Claine
AU - Saito, Shigeki
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AU - Delsing, Angela
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AU - Grijalba, Carolina Quintana
AU - Hou, Peter C.
AU - Seethala, Raghu
AU - Aisiku, Imo
AU - Henderson, Galen
AU - Frendl, Gyorgy
AU - Hou, Sen-Kuang
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N1 - Funding Information: This study was funded by the US National Institutes of Health (GM142992 to PS, HL140026 to CSC, and HL103836 and HL135849 to LBW) and the European Society of Intensive Care Medicine. We thank Fabiana Madotto (IRCCS Sesto San Giovanni: Sesto San Giovanni, Lombardia, Italy), James Anstey (University of California San Francisco, San Francisco, CA, USA), and Nader Najafi (University of California San Francisco) for their contributions to data collection, cleaning, and analysis. MC reports grants from the US National Institute on Drug Abuse (R01 DA051464), the US Department of Defense Peer Reviewed Medical Research Program (W81XWH-21-1-0009), the National Institute on Aging (R21 AG068720), grants from the National Institute of General Medical Sciences (R01 GM123193), grants from the National Institute of Diabetes and Digestive and Kidney Diseases (R01 DK126933), EarlySense (Tel Aviv, Israel), and the National Heart, Lung, and Blood Institute (NHLBI; R01 HL157262), outside the submitted work. AS reports grants from the NHLBI, during the conduct of the study. JGL reports grants from the European Society of Intensive Care Medicine, during the conduct of the study. We thank all patients and researchers who participated in the NHLBI ARDS Network trials (ALVEOLI, FACTT, and SAILS) from which data from this study were derived. We acknowledge the contributions of health-care providers and research staff who enabled the successful completion of these trials. In addition, we thank the contributions of the Biological Specimen and Data Repository Information Coordinating Center of the NHLBI that made the data and biological specimens available to do these studies. This manuscript was prepared using ALVEOLI, ARDSNET, and FACTT research materials obtained from the NHLBI Biologic Specimen and Data Repository Information Coordinating Center and does not necessarily reflect the opinions or views of the ALVEOLI, ARDSNET, FACTT, or NHLBI. Funding Information: This study was funded by the US National Institutes of Health (GM142992 to PS, HL140026 to CSC, and HL103836 and HL135849 to LBW) and the European Society of Intensive Care Medicine. We thank Fabiana Madotto (IRCCS Sesto San Giovanni: Sesto San Giovanni, Lombardia, Italy), James Anstey (University of California San Francisco, San Francisco, CA, USA), and Nader Najafi (University of California San Francisco) for their contributions to data collection, cleaning, and analysis. MC reports grants from the US National Institute on Drug Abuse (R01 DA051464), the US Department of Defense Peer Reviewed Medical Research Program (W81XWH-21-1-0009), the National Institute on Aging (R21 AG068720), grants from the National Institute of General Medical Sciences (R01 GM123193), grants from the National Institute of Diabetes and Digestive and Kidney Diseases (R01 DK126933), EarlySense (Tel Aviv, Israel), and the National Heart, Lung, and Blood Institute (NHLBI; R01 HL157262), outside the submitted work. AS reports grants from the NHLBI, during the conduct of the study. JGL reports grants from the European Society of Intensive Care Medicine, during the conduct of the study. We thank all patients and researchers who participated in the NHLBI ARDS Network trials (ALVEOLI, FACTT, and SAILS) from which data from this study were derived. We acknowledge the contributions of health-care providers and research staff who enabled the successful completion of these trials. In addition, we thank the contributions of the Biological Specimen and Data Repository Information Coordinating Center of the NHLBI that made the data and biological specimens available to do these studies. This manuscript was prepared using ALVEOLI, ARDSNET, and FACTT research materials obtained from the NHLBI Biologic Specimen and Data Repository Information Coordinating Center and does not necessarily reflect the opinions or views of the ALVEOLI, ARDSNET, FACTT, or NHLBI. Publisher Copyright: © 2022 Elsevier Ltd
PY - 2022/4/1
Y1 - 2022/4/1
N2 - Background: Two acute respiratory distress syndrome (ARDS) subphenotypes (hyperinflammatory and hypoinflammatory) with distinct clinical and biological features and differential treatment responses have been identified using latent class analysis (LCA) in seven individual cohorts. To facilitate bedside identification of subphenotypes, clinical classifier models using readily available clinical variables have been described in four randomised controlled trials. We aimed to assess the performance of these models in observational cohorts of ARDS. Methods: In this observational, multicohort, retrospective study, we validated two machine-learning clinical classifier models for assigning ARDS subphenotypes in two observational cohorts of patients with ARDS: Early Assessment of Renal and Lung Injury (EARLI; n=335) and Validating Acute Lung Injury Markers for Diagnosis (VALID; n=452), with LCA-derived subphenotypes as the gold standard. The primary model comprised only vital signs and laboratory variables, and the secondary model comprised all predictors in the primary model, with the addition of ventilatory variables and demographics. Model performance was assessed by calculating the area under the receiver operating characteristic curve (AUC) and calibration plots, and assigning subphenotypes using a probability cutoff value of 0·5 to determine sensitivity, specificity, and accuracy of the assignments. We also assessed the performance of the primary model in EARLI using data automatically extracted from an electronic health record (EHR; EHR-derived EARLI cohort). In Large Observational Study to Understand the Global Impact of Severe Acute Respiratory Failure (LUNG SAFE; n=2813), a multinational, observational ARDS cohort, we applied a custom classifier model (with fewer variables than the primary model) to determine the prognostic value of the subphenotypes and tested their interaction with the positive end-expiratory pressure (PEEP) strategy, with 90-day mortality as the dependent variable. Findings: The primary clinical classifier model had an area under receiver operating characteristic curve (AUC) of 0·92 (95% CI 0·90–0·95) in EARLI and 0·88 (0·84–0·91) in VALID. Performance of the primary model was similar when using exclusively EHR-derived predictors compared with manually curated predictors (AUC=0·88 [95% CI 0·81–0·94] vs 0·92 [0·88–0·97]). In LUNG SAFE, 90-day mortality was higher in patients assigned the hyperinflammatory subphenotype than in those with the hypoinflammatory phenotype (414 [57%] of 725 vs 694 [33%] of 2088; p<0·0001). There was a significant treatment interaction with PEEP strategy and ARDS subphenotype (p=0·041), with lower 90-day mortality in the high PEEP group of patients with the hyperinflammatory subphenotype (hyperinflammatory subphenotype: 169 [54%] of 313 patients in the high PEEP group vs 127 [62%] of 205 patients in the low PEEP group; hypoinflammatory subphenotype: 231 [34%] of 675 patients in the high PEEP group vs 233 [32%] of 734 patients in the low PEEP group). Interpretation: Classifier models using clinical variables alone can accurately assign ARDS subphenotypes in observational cohorts. Application of these models can provide valuable prognostic information and could inform management strategies for personalised treatment, including application of PEEP, once prospectively validated. Funding: US National Institutes of Health and European Society of Intensive Care Medicine.
AB - Background: Two acute respiratory distress syndrome (ARDS) subphenotypes (hyperinflammatory and hypoinflammatory) with distinct clinical and biological features and differential treatment responses have been identified using latent class analysis (LCA) in seven individual cohorts. To facilitate bedside identification of subphenotypes, clinical classifier models using readily available clinical variables have been described in four randomised controlled trials. We aimed to assess the performance of these models in observational cohorts of ARDS. Methods: In this observational, multicohort, retrospective study, we validated two machine-learning clinical classifier models for assigning ARDS subphenotypes in two observational cohorts of patients with ARDS: Early Assessment of Renal and Lung Injury (EARLI; n=335) and Validating Acute Lung Injury Markers for Diagnosis (VALID; n=452), with LCA-derived subphenotypes as the gold standard. The primary model comprised only vital signs and laboratory variables, and the secondary model comprised all predictors in the primary model, with the addition of ventilatory variables and demographics. Model performance was assessed by calculating the area under the receiver operating characteristic curve (AUC) and calibration plots, and assigning subphenotypes using a probability cutoff value of 0·5 to determine sensitivity, specificity, and accuracy of the assignments. We also assessed the performance of the primary model in EARLI using data automatically extracted from an electronic health record (EHR; EHR-derived EARLI cohort). In Large Observational Study to Understand the Global Impact of Severe Acute Respiratory Failure (LUNG SAFE; n=2813), a multinational, observational ARDS cohort, we applied a custom classifier model (with fewer variables than the primary model) to determine the prognostic value of the subphenotypes and tested their interaction with the positive end-expiratory pressure (PEEP) strategy, with 90-day mortality as the dependent variable. Findings: The primary clinical classifier model had an area under receiver operating characteristic curve (AUC) of 0·92 (95% CI 0·90–0·95) in EARLI and 0·88 (0·84–0·91) in VALID. Performance of the primary model was similar when using exclusively EHR-derived predictors compared with manually curated predictors (AUC=0·88 [95% CI 0·81–0·94] vs 0·92 [0·88–0·97]). In LUNG SAFE, 90-day mortality was higher in patients assigned the hyperinflammatory subphenotype than in those with the hypoinflammatory phenotype (414 [57%] of 725 vs 694 [33%] of 2088; p<0·0001). There was a significant treatment interaction with PEEP strategy and ARDS subphenotype (p=0·041), with lower 90-day mortality in the high PEEP group of patients with the hyperinflammatory subphenotype (hyperinflammatory subphenotype: 169 [54%] of 313 patients in the high PEEP group vs 127 [62%] of 205 patients in the low PEEP group; hypoinflammatory subphenotype: 231 [34%] of 675 patients in the high PEEP group vs 233 [32%] of 734 patients in the low PEEP group). Interpretation: Classifier models using clinical variables alone can accurately assign ARDS subphenotypes in observational cohorts. Application of these models can provide valuable prognostic information and could inform management strategies for personalised treatment, including application of PEEP, once prospectively validated. Funding: US National Institutes of Health and European Society of Intensive Care Medicine.
UR - https://www.scopus.com/pages/publications/85124466107
U2 - 10.1016/S2213-2600(21)00461-6
DO - 10.1016/S2213-2600(21)00461-6
M3 - Article
C2 - 35026177
SN - 2213-2600
VL - 10
SP - 367
EP - 377
JO - The Lancet Respiratory Medicine
JF - The Lancet Respiratory Medicine
IS - 4
ER -