Personal profile
Specialisation
Bioinformatics, Multi-omics data science, Machien Learning, Genomics, Tumor microenvironment
Research interests
I am interested in how informatics technologies (especially machine learning) can make our life better, especially in the treatment of cancer patients. To this end, I am working on cutting-edge ML techniques to handle multiple omics data types to study cancer, specifically focusing on the tumor microenvironment.
Related documents
Education/Academic qualification
PhD, Probabilistic Inference in Context-specific Dynamic Networks, Pohang University of Science and Technology
1 Mar 2007 → 31 Jul 2013
Award Date: 1 Aug 2013
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data
Andrade Barbosa, B. R., van Asten, S. D., Oh, J. W., Farina-Sarasqueta, A., Verheij, J., Dijk, F., van Laarhoven, H. W. M., Ylstra, B., Garcia Vallejo, J. J., van de Wiel, M. A. & Kim, Y., 1 Dec 2021, In: Nature communications. 12, 1, 6106.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile77 Downloads (Pure) -
Multi-scale spatial modeling of immune cell distributions enables survival prediction in primary central nervous system lymphoma
Roemer, M. G. M., van de Brug, T., Bosch, E., Berry, D., Hijmering, N., Stathi, P., Weijers, K., Doorduijn, J., Bromberg, J., van de Wiel, M., Ylstra, B., de Jong, D. & Kim, Y., 18 Aug 2023, In: iScience. 26, 8, 107331.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile8 Downloads (Pure) -
Genomic data integration by WON-PARAFAC identifies interpretable factors for predicting drug-sensitivity in vivo
Kim, Y., Bismeijer, T., Zwart, W., Wessels, L. F. A. & Vis, D. J., 2019, In: Nature communications. 10, 1, 5034.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile12 Downloads (Pure) -
Integrative epigenetic taxonomy of primary prostate cancer
Stelloo, S., Nevedomskaya, E., Kim, Y., Schuurman, K., Valle-Encinas, E., Lobo, J., Krijgsman, O., Peeper, D. S., Chang, S. L., Feng, F. Y. C., Wessels, L. F. A., Henrique, R., Jerónimo, C., Bergman, A. M. & Zwart, W., 1 Dec 2018, In: Nature communications. 9, 1, 4900.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile34 Downloads (Pure) -
Characterizing steroid hormone receptor chromatin binding landscapes in male and female breast cancer
Severson, T. M., Kim, Y., Joosten, S. E. P., Schuurman, K., van der Groep, P., Moelans, C. B., ter Hoeve, N. D., Manson, Q. F., Martens, J. W., van Deurzen, C. H. M., Barbe, E., Hedenfalk, I., Bult, P., Smit, V. T. H. B. M., Linn, S. C., van Diest, P. J., Wessels, L. & Zwart, W., 2018, In: Nature communications. 9, 1, 482.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile29 Downloads (Pure)