Personal profile
Specialisation
- Etiology of head and neck cancer: role of HPV and Fanconi anemia
- Genes involved in head and neck carcinogenesis, and intratumor genetic heterogeneity
- Genomic biomarkers for early detection and prognostic modeling of head and neck (pre)cancer
- Target and treatment discovery by functional genomics
- Clinical trials in head and neck oncology
Research interests
Our Head and neck cancer biology & immunology (HNCBI) research group at the Department of Otolaryngology-head and neck surgery focuses on head and neck squamous cell carcinoma (HNSCC) and the precancerous lesions from which these cancers arise with the ultimate aim to translate research findings to the clinic and improve diagnosis, treatment and surveillance. The major research themes are
- oncogenesis and genomics
- molecular diagnosis and early detection
- tumor-stroma interaction
- development and evaluation of novel treatments
I chair the Head and neck cancer biology & immunology laboratory and was appointed in 2005 as professor of cancer genomics with the focus on head and neck cancer. Research questions are ultimately focused on the improvement of diagnosis and treatment of head and neck cancer, and there is a close interaction with the clinic. I have (co)authored over 200 peer reviewed papers, and introduced models of head and neck carcinogenesis in the literature. My main interest is in fundamental and translational research, studying head and neck cancer in models as well as human patients. Several findings of own research have been brought from bench to bedside, and have been implemented in care nationally and internationally, amongst which sentinel node biopsy and testing for HPV. My main focus is to investigate etiology and oncogenesis of head and neck cancer, apply descriptive and functional genomics to identify new targets for treatment of cancer and precancer, identify biomarkers for early diagnosis and personalized treatment, and study intratumor genetic heterogeneity.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Explainable feature selection combining particle swarm optimisation with adaptive LASSO for MRI radiogenomics: Predicting HPV status in oropharyngeal cancer
Ahmadian, M., Bodalal, Z., Adib, M., Ziabari, S. S. M., Bos, P., Martens, R. M., Agrotis, G., Vens, C., Karssemakers, L., Al-Mamgani, A., de Graaf, P., Jasperse, B., Brakenhoff, R. H., Leemans, C. R., Beets-Tan, R. G. H., van den Brekel, M. W. M. & Castelijns, J. A., Feb 2026, In: Computer methods and programs in biomedicine. 275, p. 109204 109204.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile318 Downloads (Pure) -
The critical role of GRP78/BiP MARylation in ER stress of KRAS-mutant colorectal cancer
Wondergem, N. E., Poell, J. B., In 't Veld, S. G. J. G., Post, E., Mes, S. W., Best, M. G., van Wieringen, W. N., Klausch, T., Baatenburg de Jong, R. J., Terhaard, C. H. J., Takes, R. P., Langendijk, J. A., Verdonck-de Leeuw, I. M., Lamers, F., Leemans, C. R., Bloemena, E., Würdinger, T. & Brakenhoff, R. H., 23 Jan 2026, In: JCI insight. 11, 2, e182809.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Downloads (Pure) -
An unexpected role of CLASP1 in radiation response and S-phase regulation of head and neck cancer cells
de Roest, R. H., Buijze, M., Veth, M., de Lint, K., Pai, G., Rooimans, M. A., Wolthuis, R. M. F., Brink, A., Poell, J. B. & Brakenhoff, R. H., 1 Aug 2025, In: PLoS ONE. 20, 8 August, e0329731.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile17 Downloads (Pure) -
Author Correction: Hallmarks of a genomically distinct subclass of head and neck cancer (Nature Communications, (2024), 15, 1, (9060), 10.1038/s41467-024-53390-3)
Muijlwijk, T., Nauta, I. H., van der Lee, A., Grünewald, K. J. T., Brink, A., Ganzevles, S. H., Baatenburg de Jong, R. J., Atanesyan, L., Savola, S., van de Wiel, M. A., Peferoen, L. A. N., Bloemena, E., van de Ven, R., Leemans, C. R., Poell, J. B. & Brakenhoff, R. H., 1 Dec 2025, In: Nat. Commun.. 16, 1, 1705.Research output: Contribution to journal › Comment/Letter to the editor › Academic
Open AccessFile23 Downloads (Pure) -
Ferroptosis-Related Gene Signatures: Prognostic Role in HPV-Positive Oropharyngeal Squamous Cell Carcinoma
Lenoci, D., Serafini, M. S., Lucchetta, M., Cavalieri, S., Brakenhoff, R. H., Hoebers, F., Scheckenbach, K., Poli, T., Licitra, L. & de Cecco, L., 1 Feb 2025, In: Cancers. 17, 3, 530.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile25 Downloads (Pure)
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Clonal evolution in relapse of chemoradiation treated head and neck cancer
Brakenhoff, R. (Invited speaker)
28 Nov 2018Activity: Talk or presentation › Invited talk › Academic
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Noninvasive molecular diagnosis and targeted chemopreventive treatment of oral precancers
Brakenhoff, R. (Keynote speaker)
28 Aug 2018Activity: Talk or presentation › Invited talk › Academic
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8th European Congress on Head and Neck Oncology (ECHNO)
Brakenhoff, R. (Invited speaker)
13 Apr 2018Activity: Talk or presentation › Oral presentation › Academic
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Chair Session "Molecular biology of HPV-associated disease & Host-directed mechanisms of therapy"
Brakenhoff, R. (Invited speaker)
26 Jan 2018Activity: Talk or presentation › Invited talk › Academic
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Curriculum Committee Master Oncology
Brakenhoff, R. (Other)
2017 → …Activity: Educational contribution / Supervising student theses, products › Other
Datasets
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Spatial immunological characterization of CNA-quiet oral cancer
van de Ven, R. (Owner), Poell, J. B. (Creator), Muijlwijk, T. (Creator), Ganzevles, S. H. (Data Collector), Leemans, C. R. (Supervisor) & Brakenhoff, R. H. (Supervisor), BioImage Archive, 9 Sept 2024
DOI: 10.6019/S-BIAD1352, https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1352
Dataset
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Genomic characterization of CNA-quiet oral cancer
van de Ven, R. (Contributor), Muijlwijk, T. (Creator), Nauta, I. H. (Creator), van der Lee, A. (Contributor), Brink, A. (Creator), Ganzevles, S. H. (Contributor), Leemans, C. R. (Supervisor), Poell, J. B. (Creator) & Brakenhoff, R. H. (Supervisor), European genome-phenome archive, 16 Sept 2024
DOI: 10.1038/s41467-025-57020-4, https://ega-archive.org/datasets/EGAD50000000790
Dataset