Personal profile
Specialisation
- Head and neck cancer and precancer biology
- Genomics and bioinformatics
- Targeted therapy
- Early cancer detection
Research interests
Our Head and neck cancer biology & immunology (HNCBI) research group at the Department of Otolaryngology-head and neck surgery focuses on head and neck squamous cell carcinoma (HNSCC) and the precancerous lesions from which these cancers arise with the ultimate aim to translate research findings to the clinic and improve diagnosis, treatment and surveillance. The major research themes are
- oncogenesis and genomics
- molecular diagnosis and early detection
- tumor-stroma interaction
- development and evaluation of novel treatments
After finishing a Master’s degree in Genomics and Bioinformatics at Utrecht University, I enrolled in a PhD project on functional genomics in the lab of Edwin Cuppen at the Hubrecht Institute in Utrecht (2007-2012). Following my PhD, I worked as a postdoc in the lab of Roderick Beijersbergen at the Dutch Cancer Institute (NKI) on targeted therapeutics and dynamic cell signaling. In 2016 I joined the laboratory of Head and neck cancer biology & immunology at Amsterdam UMC as a bioinformatician with wet-lab competence.
My focus in the group is the application of next-generation sequencing approaches to detect and classify head and neck cancer and precancerous lesions. We perform targeted deep sequencing to achieve sensitive cancer detection from non-invasive samples such as plasma and oral brushes or rinses. We specifically apply these technologies to genetically characterize and monitor oral leukoplakia, a potentially malignant disorder of the oral cavity. Similarly, we detect precancerous changes in the oral mucosa of Fanconi Anemia patients: individuals with a greatly increased risk of HNSCC due to their genetic predisposition. Our goal is to improve patient outcome through early detection and better risk stratification. Furthermore, genetic characterization of tumors and recurrences allow us to trace the evolutionary trajectory of tumors and gain insight into the carcinogenic process. Finally, I also oversee bioinformatics analyses of projects involving next-generation-sequencing including scRNA-seq and genome-wide CRISPR-Cas9 screens.
Related documents
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
Fingerprint
- 1 Similar Profiles
Collaborations and top research areas from the last five years
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The critical role of GRP78/BiP MARylation in ER stress of KRAS-mutant colorectal cancer
Wondergem, N. E., Poell, J. B., In 't Veld, S. G. J. G., Post, E., Mes, S. W., Best, M. G., van Wieringen, W. N., Klausch, T., Baatenburg de Jong, R. J., Terhaard, C. H. J., Takes, R. P., Langendijk, J. A., Verdonck-de Leeuw, I. M., Lamers, F., Leemans, C. R., Bloemena, E., Würdinger, T. & Brakenhoff, R. H., 23 Jan 2026, In: JCI insight. 11, 2, e182809.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
An unexpected role of CLASP1 in radiation response and S-phase regulation of head and neck cancer cells
de Roest, R. H., Buijze, M., Veth, M., de Lint, K., Pai, G., Rooimans, M. A., Wolthuis, R. M. F., Brink, A., Poell, J. B. & Brakenhoff, R. H., 1 Aug 2025, In: PLoS ONE. 20, 8 August, e0329731.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile11 Downloads (Pure) -
Author Correction: Hallmarks of a genomically distinct subclass of head and neck cancer (Nature Communications, (2024), 15, 1, (9060), 10.1038/s41467-024-53390-3)
Muijlwijk, T., Nauta, I. H., van der Lee, A., Grünewald, K. J. T., Brink, A., Ganzevles, S. H., Baatenburg de Jong, R. J., Atanesyan, L., Savola, S., van de Wiel, M. A., Peferoen, L. A. N., Bloemena, E., van de Ven, R., Leemans, C. R., Poell, J. B. & Brakenhoff, R. H., 1 Dec 2025, In: Nat. Commun.. 16, 1, 1705.Research output: Contribution to journal › Comment/Letter to the editor › Academic
Open AccessFile17 Downloads (Pure) -
Loss of the Y Chromosome in Oral Potentially Premalignant Disorders Predicts Malignant Progression: An Integrative Cross-Species Multi-Cohort Bioinformatic Study
Han, R., Poell, J. B., Conde-Lopez, C., Salo, T., Kurth, I., Brakenhoff, R. H. & Hess, J., 22 Oct 2025, (E-pub ahead of print) In: Head and Neck.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Downloads (Pure) -
New insights into the genetic progression of cancer through longitudinal analysis of oral lesions
Wils, L. J., Poell, J. B., Brink, A., Peferoen, L. A. N., Evren, I., Brouns, E. R., de Visscher, J. G. A., van der Meij, E. H., Bloemena, E. & Brakenhoff, R. H., 1 Oct 2025, In: Journal of pathology. 267, 2, p. 155-167 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile24 Downloads (Pure)
Datasets
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Genomic characterization of CNA-quiet oral cancer
van de Ven, R. (Contributor), Muijlwijk, T. (Creator), Nauta, I. H. (Creator), van der Lee, A. (Contributor), Brink, A. (Creator), Ganzevles, S. H. (Contributor), Leemans, C. R. (Supervisor), Poell, J. B. (Creator) & Brakenhoff, R. H. (Supervisor), European genome-phenome archive, 16 Sept 2024
DOI: 10.1038/s41467-025-57020-4, https://ega-archive.org/datasets/EGAD50000000790
Dataset
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Spatial immunological characterization of CNA-quiet oral cancer
van de Ven, R. (Owner), Poell, J. B. (Creator), Muijlwijk, T. (Creator), Ganzevles, S. H. (Data Collector), Leemans, C. R. (Supervisor) & Brakenhoff, R. H. (Supervisor), BioImage Archive, 9 Sept 2024
DOI: 10.6019/S-BIAD1352, https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1352
Dataset