Projects per year
Personal profile
Specialisation
The tumour microenvironment in non-small cell lung cancer.
Research interests
The tumour is composed of much more than tumour cells, and these infiltrating immune and stromal cell cells are manipulated by the cancer to avoid immune rejection. This tumour microenvironment (TME) has a very important role in determining response to treatment. Using state-of-the art technologies Van Maldegem aims to enhance our understanding of the interplay between the tumour cells and the TME. Imaging Mass Cytometry enables the simultaneous staining of almost 40 markers in a tissue section, thereby providing a detailed characterisation of the many different cells in the TME, while at the same time revealing the spatial patterns in which the cells are arranged within the tissue and in relation to eachother (cellular communities).
In order to understand how we can manipulate the TME to benefit therapeutic strategies, we will first need to better understand the dynamics within this complex system. How does the TME evolve over time during tumour development, and what are the selective forces that drive this evolution? How do the cellular communities change when we intervene, for example with an immunotherapy, or conventional therapies such as radiotherapy? By addressing these questions using in vitro, in vivo and translational work, Van Maldegem aims to (1) establish biomarkers based on TME profiles predicting response to therapy, (2) identify novel therapeutic targets, and (3) rationalise therapeutic combinations to optimally harness anti-tumour immunity.
Education/Academic qualification
PhD, Immunoglobulin gene alterations in normal and neoplastic B cells, Academic Medical Centre (AMC)
1 Mar 2004 → 19 Nov 2009
Award Date: 19 Nov 2009
External positions
visiting scientist, The Francis Crick Institute
1 Oct 2021 → 1 Oct 2023
postdoc, CRUK London Research Institute
1 Jan 2015 → 1 Oct 2016
postdoc, The Francis Crick Institute
1 Jan 2015 → 30 Sept 2021
postdoc, Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.
1 Jul 2009 → 31 Dec 2014
Keywords
- RC0254 Neoplasms. Tumors. Oncology (including Cancer)
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Collaborations and top research areas from the last five years
Projects
- 1 Finished
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Restriction of the lymphoma-associated DNA mutator AID.
van Maldegem, F. (Principal investigator)
01/07/2011 → 31/12/2014
Project: Research
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Deep cell phenotyping and spatial analysis of multiplexed imaging with TRACERx-PHLEX
Magness, A., Colliver, E., Enfield, K. S. S., Lee, C., Shimato, M., Daly, E., Moore, D. A., Sivakumar, M., Valand, K., Levi, D., Hiley, C. T., Hobson, P. S., van Maldegem, F., Reading, J. L., Quezada, S. A., Downward, J., Sahai, E., Swanton, C. & Angelova, M., 1 Dec 2024, In: Nature communications. 15, 1, 5135.Research output: Contribution to journal › Article › Academic › peer-review
Open Access3 Citations (Scopus) -
Imaging mass cytometry in preclinical studies of lung cancer
van Maldegem, F., 1 Jan 2024, Revealing Uncharted Biology with Single Cell Multiplex Proteomic Technologies: Applications. Elsevier, p. 163-179 17 p. (Revealing Uncharted Biology with Single Cell Multiplex Proteomic Technologies: Applications).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
1 Citation (Scopus) -
Single-arm trial of neoadjuvant ipilimumab plus nivolumab with chemoradiotherapy in patients with resectable and borderline resectable lung cancer: The INCREASE study
Bahce, I., Dickhoff, C., Schneiders, F. L., Veltman, J., Heineman, D. J., Hashemi, S. M. S., Vrijmoet, A., Houda, I., Ulas, E. B., Bakker, J., van de Ven, P., Bouwhuis, N., Meijboom, L. J., Oprea-Lager, D. E., van Maldegem, F., Fransen, M. F., de Gruijl, T. D., Radonic, T. & Senan, S., 30 Sept 2024, In: Journal for immunotherapy of cancer. 12, 9, e009799.Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
Spatial Architecture of Myeloid and T Cells Orchestrates Immune Evasion and Clinical Outcome in Lung Cancer
Enfield, K. S. S., Colliver, E., Lee, C. S. Y., Magness, A., Moore, D. A., Sivakumar, M., Grigoriadis, K., Pich, O., Karasaki, T., Hobson, P. S., Levi, D., Veeriah, S., Puttick, C., Nye, E. L., Green, M., Dijkstra, K. K., Shimato, M., Akarca, A. U., Marafioti, T. & Salgado, R. & 15 others, , 1 Jun 2024, In: Cancer discovery. 14, 6, p. 1018-1047 30 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access26 Citations (Scopus) -
Spatial multiplex analysis of lung cancer reveals that regulatory T cells attenuate KRAS-G12C inhibitor-induced immune responses
Cole, M., Anastasiou, P., Lee, C., Yu, X., de Castro, A., Roelink, J., Moore, C., Mugarza, E., Jones, M., Valand, K., Rana, S., Colliver, E., Angelova, M., Enfield, K. S. S., Magness, A., Mullokandov, A., Kelly, G., de Gruijl, T. D., Molina-Arcas, M. & Swanton, C. & 2 others, , 1 Nov 2024, In: Science advances. 10, 44, p. eadl6464Research output: Contribution to journal › Article › Academic › peer-review
2 Citations (Scopus)
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Imaging Mass Cytometry to investigate cellular communities in the tumour microenvironment
van Maldegem, F. (Speaker)
11 Mar 2025Activity: Talk or presentation › Invited talk › Academic
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Identifying therapy resistance mechanisms using spatial analysis of the lung cancer tumor microenvironment
van Maldegem, F. (Invited speaker)
17 Jun 2024Activity: Talk or presentation › Invited talk › Academic
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Spatial proteomic analysis of a lung cancer model reveals regulatory T cells as modulators of KRAS-G12C inhibitor-induced immune response
van Maldegem, F. (Speaker)
11 Jun 2024Activity: Talk or presentation › Invited talk › Academic
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Journal for Immunotherapy of Cancer (Journal)
van Maldegem, F. (Reviewer)
28 Apr 2024Activity: Publication peer-review and editorial work › publication_peer_review
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LUMC Immunology Review Club: The Lung Cancer TME
van Maldegem, F. (Invited speaker)
Apr 2024Activity: Talk or presentation › Invited talk › Academic
Prizes
Press/Media
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Immune response to KRAS inhibition, Fluidigm Spotlight article
20/07/2021
1 Media contribution
Press/Media: research
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Webinar: Spatial Characterization of the Lung Tumor Microenvironment in Response to KRAS G12C Inhibition
25/08/2016
1 Media contribution
Press/Media: research
Impacts
Datasets
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TRACERx PHLEX test dataset, model weights & TRACERx nuclear IMC segmentation dataset
van Maldegem, F. (Contributor), Magness, A. (Creator), Colliver, E. (Creator), Enfield, K. S. S. (Creator), Lee, C. (Creator) & Swanton, C. (Contributor), Zenodo, 2023
https://zenodo.org/records/8263899
Dataset
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Imaging dataset: “Characterisation of tumour immune microenvironment remodelling following oncogene inhibition in preclinical studies using an optimised imaging mass cytometry workflow”
van Maldegem, F. (Creator), Valand, K. (Contributor) & Downward, J. (Contributor), Figshare, 13 Jul 2021
https://hdl.handle.net/10779/crick.c.5270621.v2
Dataset
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RNAseq datasets: GSE183549 and GSE199582 (Mugarza, Sci. Adv. 2022)
van Maldegem, F. (Contributor), Mugarza, E. (Creator), Molina-Arcas, M. (Creator), Sopena, M. L. (Creator) & Downward, J. (Contributor), NCBI GEO, 24 Aug 2022
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183549 and one more link, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199582 (show fewer)
Dataset
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IMC image files related to: "Therapeutic KRASG12C inhibition drives effective interferon-mediated anti-tumour immunity in immunogenic lung cancers" Mugarza, et al.
van Maldegem, F. (Creator), Valand, K. (Creator) & Downward, J. (Contributor), Figshare, 13 Apr 2022
DOI: 10.25418/crick.19590259, https://doi.org/10.25418/crick.19590259
Dataset
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imcyto: image segmentation pipeline
van Maldegem, F. (Creator), Valand, K. (Creator), Patel, H. (Creator), Colliver, E. (Creator), Angelova, M. (Creator) & Bah, N. (Creator), nf-core, 2021
https://nf-co.re/imcyto/1.0.0/
Dataset