Personal profile
Education/Academic qualification
PhD, Identification of Prokaryotic Species and Exploration of the Human Gut Microbiome and the Arctic Ocean Metabolism Using Metagenomics, European Molecular Biology Laboratory
1 May 2009 → 22 Jul 2013
Award Date: 22 Jul 2013
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Dive into the research topics where Daniel Mende is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Author Correction: A roadmap for equitable reuse of public microbiome data (Nature Microbiology, (2025), 10, 10, (2384-2395), 10.1038/s41564-025-02116-2)
Hug, L. A., Hatzenpichler, R., Moraru, C., Soares, A. R., Meyer, F., Heyder, A., Zwirzitz, B., Ziels, R. M., Zhu, J., Zhang, Y., Xiu, W., Wu, M., Woyke, T., Worden, A. Z., Williams, T. A., Williams, C. L., Wichels, A., Weissman, J. L., Weiss, L. C. & Weir, T. & 59 others, , 2025, (E-pub ahead of print) In: Nature microbiology.Research output: Contribution to journal › Comment/Letter to the editor › Academic
Open AccessFile20 Downloads (Pure) -
Dietary patterns in Tanzania’s transitioning rural and urban areas
Paulo, L. S., Lenters, V. C., Chillo, P., Wanjohi, M., Piedade, G. J., Mende, D. R., Harris, V., Kamuhabwa, A., Kwesigabo, G., Asselbergs, F. W. & Klipstein-Grobusch, K., 1 Dec 2025, In: Journal of health, population, and nutrition. 44, 1, 71.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile135 Downloads (Pure) -
Microbiota-derived indole metabolites inhibit rotavirus infection in vitro and in vivo and in human infants
Wirusanti, N. I., van Schajik, Y., Kim, J., Frempong, J. F., Simkhada, N., Fisher, S., Pucci, N., Piedade, G. J., Luchen, C. C., Chibuye, M., Simuyandi, M., Chisenga, C., Silwamba, S., Chibesa, K., Nzangwa, B. T., Kuntawala, D. H., Ramani, S., Mende, D., Baldridge, M. T. & Sovran, B. & 1 others, , 29 Oct 2025, In: bioRxiv : the preprint server for biology.Research output: Contribution to journal › Article › Academic › peer-review
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Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome
Pucci, N., Ujčič-Voortman, J., Verhoeff, A. P. & Mende, D. R., 2025, In: PeerJ. 13, 1, e18602.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile59 Downloads (Pure) -
The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities
Dmitrijeva, M., Ruscheweyh, H.-J., Feer, L., Li, K., Miravet-Verde, S., Sintsova, A., Mende, D. R., Zeller, G. & Sunagawa, S., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D797-D805Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile42 Downloads (Pure)