Personal profile
Research interests
Our Autophagy-directed Immunity (ADI) research group focuses on elucidating the mechanisms governing autophagy pathways, ultimately aiming to maximize the therapeutic potential of targeting autophagy to intervene in chronic viral infections and inflammatory diseases. Autophagy pathways are not only endowed with the capacity to degrade viruses and instruct adaptive T cell-mediated responses, but also to mediate the release of cytosolic contents extracellularly and thereby control inflammatory output. We use both hypothesis-driven as well as unbiased genome-wide and proteomics approaches to define novel regulators and signalling components of autophagy pathways. In this context, we have recently discovered an important role for autophagy in restricting HIV-1 infection through a novel TRIM5α-Atg16L1-Atg5 mechanism. Currently, we are investigating the impact of the TRIM5α-mediated autophagy pathway on HIV-1 disease progression and inflammatory signatures.
Our major research lines are:
- Molecular Regulation of Degradative Autophagy and Secretory Autophagy in Viral Infections, with particular emphasis on HIV-1 and Dengue virus infection.
- Function of Autophagy Molecules and Autophagy Vesicles on Virus Restriction, Molecular Inflammation and T-cell mediated Immunity - using organoid technology and ex vivo explant tissue models.
- Impact of Autophagy Mechanisms and Polymorphisms on Clinical Disease Outcomes
Current members:
- Renée RCE Schreurs - Postdoctoral fellow
- Alexandra PM Cloherty - PhD candidate
- Tracy-Jane THD Eisden - PhD candidate [Alliance AMC-VUmc joint project]
For any enquiries, please contact: [email protected]
Specialisation
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Autophagy-enhancing strategies to promote intestinal viral resistance and mucosal barrier function in SARS-CoV-2 infection
Rader, A. G., Cloherty, A. P. M., Patel, K. S., Almandawi, D. D. A., Perez-Vargas, J., Wildenberg, M. E., Muncan, V., Schreurs, R. R. C. E., Jean, F. & Ribeiro, C. M. S., 10 Jun 2025, In: Autophagy reports. 4, 1, p. 2514232Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Downloads (Pure) -
Autophagy-enhancing ATG16L1 polymorphism is associated with improved clinical outcome and T-cell immunity in chronic HIV-1 infection
Schreurs, R. R. C. E., Koulis, A., Booiman, T., Boeser-Nunnink, B., Cloherty, A. P. M., Rader, A. G., Patel, K. S., Kootstra, N. A. & Ribeiro, C. M. S., 1 Dec 2024, In: Nature communications. 15, 1, 2465.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile31 Downloads (Pure) -
HIV-1 exploits LBPA-dependent intraepithelial trafficking for productive infection of human intestinal mucosa
Rader, A. G., Cloherty, A. P. M., Patel, K. S., Almandawi, D. D. A., Pajkrt, D., Wolthers, K. C., Sridhar, A., van Piggelen, S., Baaij, L. E., Schreurs, R. R. C. E. & Ribeiro, C. M. S., 1 Dec 2024, In: PLoS pathogens. 20, 12, e1012714.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile38 Downloads (Pure) -
Prevotella timonensis Bacteria Associated With Vaginal Dysbiosis Enhance Human Immunodeficiency Virus Type 1 Susceptibility Of Vaginal CD4+ T Cells
van Teijlingen, N. H., van Smoorenburg, M. Y., Sarrami-Forooshani, R., Zijlstra-Willems, E. M., van Hamme, J. L., Borgdorff, H., van de Wijgert, J. H. H. M., van Leeuwen, E., van der Post, J. A. M., Strijbis, K., Ribeiro, C. M. S. & Geijtenbeek, T. B. H., 15 Jul 2024, In: Journal of infectious diseases. 230, 1, p. e43-e47Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile23 Downloads (Pure) -
Berbamine suppresses intestinal SARS-CoV-2 infection via a BNIP3-dependent autophagy blockade
Cloherty, A. P. M., Rader, A. G., Patel, K. S., Pérez-Vargas, J., Thompson, C. A. H., Ennis, S., Niikura, M., Wildenberg, M. E., Muncan, V., Schreurs, R. R. C. E., Jean, F. & Ribeiro, C. M. S., 1 Dec 2023, In: Emerging microbes & infections. 12, 1, p. 2195020 2195020.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile31 Downloads (Pure)