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TRACERx PHLEX test dataset, model weights & TRACERx nuclear IMC segmentation dataset

  • Febe van Maldegem (Contributor)
  • Alastair Magness (Creator)
  • Emma Colliver (Creator)
  • Katey S. S. Enfield (Creator)
  • Claudia Lee (Creator)
  • Charles Swanton (Contributor)

Dataset

Description

This repository contains three archives pertaining to the TRACERx PHLEX multiplexed imaging pipelines.

Weights for the deep-imcyto neural network models
The PHLEX test dataset consisting of two .ome.tiff files of imaging mass cytometry data
The TRACERx Nuclear IMC Segmentation dataset, a training dataset of IMC image tiles and ~42,000 expert labelled nuclei from diverse lung, normal and other tissue types.
Date made available2023
PublisherZenodo

Access Dataset

  • Deep cell phenotyping and spatial analysis of multiplexed imaging with TRACERx-PHLEX

    Magness, A., Colliver, E., Enfield, K. S. S., Lee, C., Shimato, M., Daly, E., Moore, D. A., Sivakumar, M., Valand, K., Levi, D., Hiley, C. T., Hobson, P. S., van Maldegem, F., Reading, J. L., Quezada, S. A., Downward, J., Sahai, E., Swanton, C. & Angelova, M., 1 Dec 2024, In: Nature communications. 15, 1, 5135.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
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    63 Downloads (Pure)

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